Alistipes timonensis JC136 strain DSM 25383

Gram-negativeanaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes timonensis strain JC136, designated as DSM 25383, is a Gram-negative bacterium characterized by its anaerobic nature, meaning it thrives in environments devoid of oxygen. This strain possesses flagella, which are tail-like structures that facilitate movement, allowing it to navigate through various substrates in its ecological niche. The genomic structure of A. timonensis includes a single replicon, indicating a streamlined genetic organization. This simplicity may contribute to its adaptability in anaerobic environments. The strain is cataloged under the accession number FNRI00000000.1, which provides a reference for researchers interested in its genetic and functional attributes. Biologically, A. timonensis is noteworthy as it belongs to a genus often associated with the human gut microbiota. Its anaerobic lifestyle suggests it may play a role in the fermentation processes within the intestines, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids. These metabolic activities are critical for maintaining gut health and overall homeostasis in the host organism. Understanding the traits of A. timonensis can provide insights into the complex interactions within microbial communities, particularly those associated with human health and digestion.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes timonensis
StrainJC136 strain DSM 25383

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes timonensis JC136 strain DSM 25383 genome assembly,

Gene Summary

Adenine Count

724649 bp

Thymine Count

711172 bp

Guanine Count

1019996 bp

Cytosine Count

1032776 bp

Genome Length

3488964 bp

Protein-coding Genes

2681 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cro/c1-type hth dna-binding domain-containing proteinSAMN05444145_10947Not AvailableNegative2993526 - 29937658775.65
pp_02314SAMN05444145_10948Not AvailableNegative2994036 - 2995238Not Available
16s rrna processing protein rimmSAMN05444145_10949Not AvailableNegative2995240 - 299575519314.7
ssu ribosomal protein s16pSAMN05444145_10950Not AvailableNegative2995878 - 299643519740.4
Trna-argNot AvailableNot AvailablePositive2996657 - 2996730Not Available
signal transduction histidine kinaseSAMN05444145_10952Not AvailableNegative2996781 - 299810649702.9
signal transduction histidine kinaseSAMN05444145_10953Not AvailableNegative2998103 - 300018779633.7
chey chemotaxis protein or a chey-like rec (receiver) domainSAMN05444145_10954Not AvailableNegative3000285 - 300066514575.8
peptidase family m23SAMN05444145_10955Not AvailableNegative3000722 - 300244964118.1
regulatory proteinSAMN05444145_10956Not AvailableNegative3002434 - 300294619217.2

Displaying genes 2361 – 2370 of 2757 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.