Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Rikenellaceae |
| Genus | Alistipes |
| Species | Alistipes timonensis |
| Strain | JC136 strain DSM 25383 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
724649 bp
Thymine Count
711172 bp
Guanine Count
1019996 bp
Cytosine Count
1032776 bp
Genome Length
3488964 bp
Protein-coding Genes
2681 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ntp pyrophosphatase, house-cleaning of non-canonical ntps | SAMN05444145_101184 | Not Available | Negative | 242716 - 243036 | 12107.5 |
| predicted o-methyltransferase yrrm | SAMN05444145_101185 | Not Available | Negative | 243038 - 243685 | 24332.3 |
| dj-1/pfpi family protein | SAMN05444145_101186 | Not Available | Negative | 243685 - 244284 | 21660.9 |
| predicted zn-dependent peptidase | SAMN05444145_101187 | Not Available | Negative | 244286 - 245500 | 44798.9 |
| excinuclease abc subunit a | SAMN05444145_101188 | Not Available | Negative | 245510 - 248296 | 102798.0 |
| uncharacterized protein, yigz family | SAMN05444145_101189 | Not Available | Negative | 248471 - 249082 | 22408.6 |
| signal peptidase i | SAMN05444145_101190 | Not Available | Negative | 249085 - 250437 | 52727.2 |
| dihydrodipicolinate reductase | SAMN05444145_101191 | Not Available | Negative | 250457 - 251212 | 27228.6 |
| trna pseudouridine38-40 synthase | SAMN05444145_101192 | Not Available | Positive | 251394 - 252173 | 29513.1 |
| phospholipase_d-nuclease n-terminal | SAMN05444145_101193 | Not Available | Positive | 252170 - 252358 | 7124.97 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
