Alistipes timonensis JC136 strain DSM 25383

Gram-negativeanaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes timonensis strain JC136, designated as DSM 25383, is a Gram-negative bacterium characterized by its anaerobic nature, meaning it thrives in environments devoid of oxygen. This strain possesses flagella, which are tail-like structures that facilitate movement, allowing it to navigate through various substrates in its ecological niche. The genomic structure of A. timonensis includes a single replicon, indicating a streamlined genetic organization. This simplicity may contribute to its adaptability in anaerobic environments. The strain is cataloged under the accession number FNRI00000000.1, which provides a reference for researchers interested in its genetic and functional attributes. Biologically, A. timonensis is noteworthy as it belongs to a genus often associated with the human gut microbiota. Its anaerobic lifestyle suggests it may play a role in the fermentation processes within the intestines, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids. These metabolic activities are critical for maintaining gut health and overall homeostasis in the host organism. Understanding the traits of A. timonensis can provide insights into the complex interactions within microbial communities, particularly those associated with human health and digestion.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes timonensis
StrainJC136 strain DSM 25383

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes timonensis JC136 strain DSM 25383 genome assembly,

Gene Summary

Adenine Count

724649 bp

Thymine Count

711172 bp

Guanine Count

1019996 bp

Cytosine Count

1032776 bp

Genome Length

3488964 bp

Protein-coding Genes

2681 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein of unknown functionSAMN05444145_10780Not AvailablePositive2688334 - 268860010289.5
outer membrane protein ompaSAMN05444145_10781Not AvailableNegative2688651 - 268985343458.1
ribonucleoside-diphosphate reductase class iiSAMN05444145_10782Not AvailableNegative2690032 - 269258495587.7
endoribonuclease l-pspSAMN05444145_10783Not AvailableNegative2692773 - 269314713153.9
heat shock protein hsljSAMN05444145_10784Not AvailablePositive2693223 - 269365115337.0
malate dehydrogenase (nad)SAMN05444145_10785Not AvailableNegative2693724 - 269472236154.7
dna replication and repair protein recrSAMN05444145_10786Not AvailableNegative2694795 - 269539722323.1
sh3 domain-containing proteinSAMN05444145_10787Not AvailableNegative2695398 - 269621030246.4
oxygen toleranceSAMN05444145_10788Not AvailableNegative2696215 - 269807768462.6
fumarase, class i, homodimericSAMN05444145_10789Not AvailableNegative2698308 - 269992159353.1

Displaying genes 2121 – 2130 of 2757 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.