Alistipes timonensis JC136 strain DSM 25383

Gram-negativeanaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes timonensis strain JC136, designated as DSM 25383, is a Gram-negative bacterium characterized by its anaerobic nature, meaning it thrives in environments devoid of oxygen. This strain possesses flagella, which are tail-like structures that facilitate movement, allowing it to navigate through various substrates in its ecological niche. The genomic structure of A. timonensis includes a single replicon, indicating a streamlined genetic organization. This simplicity may contribute to its adaptability in anaerobic environments. The strain is cataloged under the accession number FNRI00000000.1, which provides a reference for researchers interested in its genetic and functional attributes. Biologically, A. timonensis is noteworthy as it belongs to a genus often associated with the human gut microbiota. Its anaerobic lifestyle suggests it may play a role in the fermentation processes within the intestines, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids. These metabolic activities are critical for maintaining gut health and overall homeostasis in the host organism. Understanding the traits of A. timonensis can provide insights into the complex interactions within microbial communities, particularly those associated with human health and digestion.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes timonensis
StrainJC136 strain DSM 25383

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes timonensis JC136 strain DSM 25383 genome assembly,

Gene Summary

Adenine Count

724649 bp

Thymine Count

711172 bp

Guanine Count

1019996 bp

Cytosine Count

1032776 bp

Genome Length

3488964 bp

Protein-coding Genes

2681 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
translation initiation factor if-3SAMN05444145_10760Not AvailablePositive2659391 - 265986118115.3
hypothetical proteinSAMN05444145_10761Not AvailablePositive2660038 - 266100336128.9
cmp-n-acetylneuraminic acid synthetaseSAMN05444145_10762Not AvailablePositive2661017 - 266167024350.0
hypothetical proteinSAMN05444145_10763Not AvailableNegative2661674 - 266255533875.6
glycosyltransferase involved in cell wall bisynthesisSAMN05444145_10764Not AvailablePositive2662622 - 266355134306.1
polyhydroxybutyrate depolymeraseSAMN05444145_10765Not AvailablePositive2663565 - 266441631984.0
atp-dependent clp protease atp-binding subunit clpbSAMN05444145_10766Not AvailableNegative2664447 - 266704496859.1
dna polymerase iii, tau subunitSAMN05444145_10767Not AvailablePositive2667245 - 266912268166.8
tyrosyl-trna synthetaseSAMN05444145_10768Not AvailablePositive2669213 - 267051748880.9
dihydroneopterin aldolaseSAMN05444145_10769Not AvailablePositive2670519 - 267087213425.4

Displaying genes 2101 – 2110 of 2757 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.