Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Rikenellaceae |
| Genus | Alistipes |
| Species | Alistipes timonensis |
| Strain | JC136 strain DSM 25383 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | anaerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
724649 bp
Thymine Count
711172 bp
Guanine Count
1019996 bp
Cytosine Count
1032776 bp
Genome Length
3488964 bp
Protein-coding Genes
2681 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN05444145_10593 | Not Available | Positive | 2059265 - 2060002 | 27992.7 |
| hypothetical protein | SAMN05444145_10594 | Not Available | Positive | 2059999 - 2061219 | 45928.0 |
| signal transduction histidine kinase | SAMN05444145_10595 | Not Available | Negative | 2061247 - 2065224 | 150603.0 |
| hypothetical protein | SAMN05444145_10596 | Not Available | Positive | 2065509 - 2067524 | 76029.4 |
| glycosyl hydrolases family 2 | SAMN05444145_10597 | Not Available | Positive | 2067537 - 2070263 | 103975.0 |
| fad dependent oxidoreductase | SAMN05444145_10598 | Not Available | Positive | 2070260 - 2072116 | 68650.1 |
| beta-xylosidase, gh43 family | SAMN05444145_10599 | Not Available | Positive | 2072136 - 2073536 | 51864.0 |
| rhamnogalacturonyl hydrolase yesr | SAMN05444145_105100 | Not Available | Positive | 2073585 - 2074781 | 46440.8 |
| rhamnogalacturonyl hydrolase yesr | SAMN05444145_105101 | Not Available | Positive | 2074795 - 2076102 | 49678.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05444145_105102 | Not Available | Positive | 2076265 - 2079441 | 119534.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
