Agrobacterium fabrum str. J-07

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum strain J-07 is a gram-negative bacterium characterized by its rod shape and aerobic metabolism. This species exhibits mobility, attributed to the presence of flagella, which facilitates its movement in various environments. Agrobacterium fabrum is mesophilic, with an optimal growth temperature of 25°C, indicating its preference for moderate temperature ranges. This strain has a unique cellular structure, consisting of two membranes and a single replicon, which is typical of many gram-negative bacteria. The organism is classified as free-living, suggesting it does not rely on a host for survival, allowing it to thrive in multiple habitats. Understanding the ecological role of Agrobacterium fabrum str. J-07 can provide insights into its interactions within various ecosystems. Its ability to inhabit diverse environments and its mobility may enable it to play significant roles in nutrient cycling and plant-microbe interactions. Furthermore, the free-living nature of this bacterium highlights its potential contributions to soil health and plant growth, possibly through mechanisms such as nitrogen fixation or biocontrol of plant pathogens. The available accession for this strain is FBWI00000000.1, which may serve as a reference for further studies on its genetic and functional characteristics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
StrainJ-07

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum str. J-07
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum str. J-07 genome assembly, contig:

Gene Summary

Adenine Count

1148956 bp

Thymine Count

1155651 bp

Guanine Count

1672331 bp

Cytosine Count

1656030 bp

Genome Length

5632968 bp

Protein-coding Genes

5519 genes

Non-Coding Genes

122 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative dihydrodipicolinate synthaseAGR8A_Cc10037Not AvailableNegative39995 - 4087931203.4
heme oxygenase-like proteinAGR8A_Cc10038Not AvailablePositive41184 - 4179822477.7
pyrimidine monooxygenase ruta, monooxygenase of the alternative pyrimidine degradation pathwayAGR8A_Cc10039Not AvailablePositive42202 - 4329339842.6
peroxyureidoacrylate/ureidoacrylate amidohydrolase rutb, enzyme of the alternative pyrimidine degradation pathwayAGR8A_Cc10040Not AvailablePositive43290 - 4403026796.7
enzyme of the alternative pyrimidine degradation pathwayAGR8A_Cc10041Not AvailablePositive44057 - 4444313745.5
enzyme of the alternative pyrimidine degradation pathwayAGR8A_Cc10042Not AvailablePositive44457 - 4524828859.7
putative malonic semialdehyde reductase ruteAGR8A_Cc10043Not AvailablePositive45245 - 4585621907.1
flavin:nadh oxidoreductase subunit of alternative pyrimidine degradation pathwayAGR8A_Cc10044Not AvailablePositive45898 - 4642218666.4
nad(p)+ transhydrogenase beta chainAGR8A_Cc10045Not AvailableNegative46526 - 4797150095.8
nad(p) transhydrogenase subunit alphaAGR8A_Cc10046Not AvailableNegative47992 - 4956655913.7

Displaying genes 131 – 140 of 1270 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.