Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Rikenellaceae |
| Genus | Alistipes |
| Species | Alistipes sp. HGB5 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
740743 bp
Thymine Count
730936 bp
Guanine Count
993821 bp
Cytosine Count
999115 bp
Genome Length
3464615 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xylose isomerase | HMPREF9720_0524 | Not Available | Negative | 2055628 - 2056941 | 49601.9 |
| carbohydrate kinase, fggy family protein | HMPREF9720_0525 | Not Available | Negative | 2056965 - 2058449 | 53471.5 |
| hydrolase, nudix family | HMPREF9720_0526 | Not Available | Negative | 2058470 - 2059216 | 28376.5 |
| aldose 1-epimerase | HMPREF9720_0527 | Not Available | Negative | 2059528 - 2060586 | 39255.1 |
| glutamate--trna ligase | HMPREF9720_0528 | Not Available | Negative | 2060586 - 2062118 | 58072.1 |
| gtp-binding protein ychf | HMPREF9720_0529 | Not Available | Negative | 2062166 - 2063266 | 40235.3 |
| glycosyl hydrolase family 3 n-terminal domain protein | HMPREF9720_0530 | Not Available | Positive | 2063733 - 2066207 | 90057.7 |
| transcriptional regulator, arac family | HMPREF9720_0531 | Not Available | Negative | 2066396 - 2066779 | 14758.0 |
| xylose operon regulatory protein | HMPREF9720_0532 | Not Available | Negative | 2066799 - 2067575 | 29382.8 |
| putative alpha-1,2-mannosidase | HMPREF9720_0533 | Not Available | Positive | 2067881 - 2070772 | 106690.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
