Alistipes indistinctus YIT 12060

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Rikenellaceae

Genus

Alistipes

Description

Alistipes indistinctus YIT 12060 is a Gram-negative, anaerobic bacterium characterized by the presence of flagella. This motility feature suggests that A. indistinctus can navigate its environment, which may be important for colonization or interaction with other microorganisms in its habitat. The organism has a single replicon, indicating a streamlined genetic organization that may contribute to its adaptability under anaerobic conditions. The accession number for its genomic data is ADLD00000000.1, which allows for further exploration of its genetic characteristics. The anaerobic nature of A. indistinctus indicates that it thrives in environments devoid of oxygen, such as the gastrointestinal tract of humans and other animals. This ecological niche is significant, as it positions A. indistinctus within a complex community of gut microbiota, which plays a crucial role in digestion, metabolism, and overall health. Understanding the traits of A. indistinctus YIT 12060 can provide insights into its role in the microbiome and its potential interactions with other microbial species. The presence of flagella suggests a potential for motility that may enhance its ability to establish itself in the gut and compete for resources. As research continues, the specific ecological roles of A. indistinctus in the gut microbiome may provide important information regarding its contributions to host health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes indistinctus
StrainYIT 12060

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Alistipes indistinctus YIT 12060


Gene Summary

Adenine Count

625577 bp

Thymine Count

664355 bp

Guanine Count

808831 bp

Cytosine Count

752215 bp

Genome Length

2850978 bp

Protein-coding Genes

2348 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinHMPREF9450_00001Not AvailablePositive1 - 91733435.0
16s ribosomal rnaNot AvailableNot AvailablePositive328 - 1844Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive584 - 3451Not Available
hypothetical proteinHMPREF9450_00002Not AvailablePositive914 - 11689818.89
hypothetical proteinHMPREF9450_00003Not AvailablePositive1165 - 13707475.78
hypothetical proteinHMPREF9450_00004Not AvailablePositive1371 - 193321189.9
hypothetical proteinHMPREF9450_00005Not AvailablePositive1966 - 20703759.49
hypothetical proteinHMPREF9450_00006Not AvailablePositive2080 - 307539998.1
hypothetical proteinHMPREF9450_00007Not AvailablePositive3060 - 458054352.1
5s ribosomal rnaNot AvailableNot AvailablePositive3547 - 3657Not Available

Displaying genes 1 – 10 of 2395 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

505 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da

Displaying 1–10 of 505 metabolites

Health Effects

No health effects information available for this bacterium.