Agrobacterium fabrum

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum is a gram-negative, aerobic bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This organism thrives in various habitats and is classified as mesophilic, with an optimal growth temperature of 25 degrees Celsius. A. fabrum is notable for possessing a single replicon and two membranes, which is typical for gram-negative bacteria. The ecological role of A. fabrum is significant as it is a free-living organism, allowing it to interact with a diverse range of environments. This adaptability may contribute to its survival and proliferation in multiple habitats, emphasizing its ecological versatility. The unique traits of A. fabrum, such as its mobility and aerobic nature, suggest it may play a role in nutrient cycling and soil health, although specific interactions within ecosystems are not detailed in the provided data. Overall, Agrobacterium fabrum exemplifies a well-adapted bacterium that occupies diverse ecological niches, highlighting the importance of microbial diversity in maintaining ecosystem functions.

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Alphaproteobacteria
Order	Hyphomicrobiales
Family	Rhizobiaceae
Genus	Agrobacterium
Species	Agrobacterium fabrum
Strain	No strain

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	Yes
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobe
Optimal temperature	25
Temperature range	Mesophilic
Habitat	Multiple
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	Not Available

Genome Summary

Agrobacterium fabrum strain PDC82 genome assembly, contig:

FNEW00000000.1

Gene Summary

Adenine Count

1136827 bp

Thymine Count

1144814 bp

Guanine Count

1663783 bp

Cytosine Count

1637536 bp

Genome Length

5582960 bp

Protein-coding Genes

5122 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
n-acetylglucosaminyl deacetylase, lmbe family	SAMN05428983_3623	Not Available	Negative	3766891 - 3767544	24553.2
glucose-1-phosphate cytidylyltransferase	SAMN05428983_3624	Not Available	Negative	3767541 - 3768353	31420.8
methyltransferase domain-containing protein	SAMN05428983_3625	Not Available	Negative	3768350 - 3769642	48356.3
dtdp-4-dehydrorhamnose 3,5-epimerase	SAMN05428983_3626	Not Available	Positive	3769947 - 3770474	19371.9
aminopeptidase-like domain-containing protein	SAMN05428983_3627	Not Available	Negative	3770479 - 3771822	49896.5
nucleoside-diphosphate-sugar epimerase	SAMN05428983_3628	Not Available	Negative	3771836 - 3772906	38606.1
glutamate-1-semialdehyde 2,1-aminomutase	SAMN05428983_3629	Not Available	Negative	3773024 - 3774427	51418.9
dna-binding response regulator, narl/fixj family, contains rec and hth domains	SAMN05428983_3630	Not Available	Negative	3774643 - 3775371	26982.5
chemotaxis protein methyltransferase cher/two-component system, chemotaxis family, cheb/cher fusion protein	SAMN05428983_3631	Not Available	Positive	3776074 - 3778482	88452.8
glycosyl transferase family 2	SAMN05428983_3632	Not Available	Negative	3778516 - 3779475	34807.7

Displaying genes 3611 – 3620 of 5241 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.