Agrobacterium fabrum

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum is a gram-negative, aerobic bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This organism thrives in various habitats and is classified as mesophilic, with an optimal growth temperature of 25 degrees Celsius. A. fabrum is notable for possessing a single replicon and two membranes, which is typical for gram-negative bacteria. The ecological role of A. fabrum is significant as it is a free-living organism, allowing it to interact with a diverse range of environments. This adaptability may contribute to its survival and proliferation in multiple habitats, emphasizing its ecological versatility. The unique traits of A. fabrum, such as its mobility and aerobic nature, suggest it may play a role in nutrient cycling and soil health, although specific interactions within ecosystems are not detailed in the provided data. Overall, Agrobacterium fabrum exemplifies a well-adapted bacterium that occupies diverse ecological niches, highlighting the importance of microbial diversity in maintaining ecosystem functions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain PDC82 genome assembly, contig:

Gene Summary

Adenine Count

1136827 bp

Thymine Count

1144814 bp

Guanine Count

1663783 bp

Cytosine Count

1637536 bp

Genome Length

5582960 bp

Protein-coding Genes

5122 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
superoxide dismutase, fe-mn familySAMN05428983_3410Not AvailableNegative3521216 - 352181522334.2
putative ig domain-containing proteinSAMN05428983_3411Not AvailableNegative3522016 - 3526410147938.0
transcriptional regulator, tetr familySAMN05428983_3412Not AvailableNegative3526678 - 352726821577.8
dihydrofolate reductaseSAMN05428983_3413Not AvailablePositive3527315 - 352786019942.0
penicillin amidase cysteine peptidase. merops family c59SAMN05428983_3414Not AvailableNegative3527936 - 352900339154.3
hypothetical proteinSAMN05428983_3415Not AvailablePositive3529112 - 352994229300.4
bile acid:na+ symporter, bass familySAMN05428983_3416Not AvailablePositive3530021 - 353097132827.6
predicted oxidoreductaseSAMN05428983_3417Not AvailableNegative3531020 - 353206638231.3
transcriptional regulator, lysr familySAMN05428983_3418Not AvailablePositive3532225 - 353313032589.6
2-keto-4-pentenoate hydrataseSAMN05428983_3419Not AvailableNegative3533229 - 353401427539.2

Displaying genes 3401 – 3410 of 5241 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.