Agrobacterium fabrum

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum is a gram-negative, aerobic bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This organism thrives in various habitats and is classified as mesophilic, with an optimal growth temperature of 25 degrees Celsius. A. fabrum is notable for possessing a single replicon and two membranes, which is typical for gram-negative bacteria. The ecological role of A. fabrum is significant as it is a free-living organism, allowing it to interact with a diverse range of environments. This adaptability may contribute to its survival and proliferation in multiple habitats, emphasizing its ecological versatility. The unique traits of A. fabrum, such as its mobility and aerobic nature, suggest it may play a role in nutrient cycling and soil health, although specific interactions within ecosystems are not detailed in the provided data. Overall, Agrobacterium fabrum exemplifies a well-adapted bacterium that occupies diverse ecological niches, highlighting the importance of microbial diversity in maintaining ecosystem functions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain PDC82 genome assembly, contig:

Gene Summary

Adenine Count

1136827 bp

Thymine Count

1144814 bp

Guanine Count

1663783 bp

Cytosine Count

1637536 bp

Genome Length

5582960 bp

Protein-coding Genes

5122 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase iSAMN05428983_2534Not AvailableNegative2514725 - 2517730109731.0
hypothetical proteinSAMN05428983_2535Not AvailablePositive2517813 - 251822315194.5
transcriptional regulator, marr familySAMN05428983_2536Not AvailablePositive2518513 - 251894716463.8
acetylornithine deacetylase/succinyl-diaminopimelate desuccinylaseSAMN05428983_2537Not AvailablePositive2519113 - 252050449810.1
cold-shock dna-binding protein familySAMN05428983_2538Not AvailableNegative2520914 - 25211237453.78
cys-trna(pro) deacylase, prolyl-trna editing enzyme ybak/ebscSAMN05428983_2539Not AvailablePositive2521593 - 252205116021.3
penicillin-binding protein 1aSAMN05428983_2540Not AvailablePositive2522168 - 252446281813.4
sugar transferase involved in lps biosynthesis (colanic, teichoic acid)SAMN05428983_2541Not AvailablePositive2524751 - 252547626516.7
cytochrome cSAMN05428983_2542Not AvailableNegative2525572 - 252615019698.3
3-deoxy-manno-octulosonate cytidylyltransferase (cmp-kdo synthetase)SAMN05428983_2543Not AvailablePositive2526301 - 252705627796.4

Displaying genes 2531 – 2540 of 5241 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.