Agrobacterium fabrum

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum is a gram-negative, aerobic bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This organism thrives in various habitats and is classified as mesophilic, with an optimal growth temperature of 25 degrees Celsius. A. fabrum is notable for possessing a single replicon and two membranes, which is typical for gram-negative bacteria. The ecological role of A. fabrum is significant as it is a free-living organism, allowing it to interact with a diverse range of environments. This adaptability may contribute to its survival and proliferation in multiple habitats, emphasizing its ecological versatility. The unique traits of A. fabrum, such as its mobility and aerobic nature, suggest it may play a role in nutrient cycling and soil health, although specific interactions within ecosystems are not detailed in the provided data. Overall, Agrobacterium fabrum exemplifies a well-adapted bacterium that occupies diverse ecological niches, highlighting the importance of microbial diversity in maintaining ecosystem functions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain PDC82 genome assembly, contig:

Gene Summary

Adenine Count

1136827 bp

Thymine Count

1144814 bp

Guanine Count

1663783 bp

Cytosine Count

1637536 bp

Genome Length

5582960 bp

Protein-coding Genes

5122 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN05428983_2314Not AvailableNegative2302551 - 230289212447.5
integration host factor subunit betaSAMN05428983_2315Not AvailableNegative2302959 - 230326111295.3
signal peptide peptidase a. serine peptidase. merops family s49SAMN05428983_2316Not AvailableNegative2303288 - 230424134758.2
lipopolysaccharide export system protein lptcSAMN05428983_2317Not AvailablePositive2304475 - 230514023816.7
lipopolysaccharide export system protein lptaSAMN05428983_2318Not AvailablePositive2305154 - 230571719951.9
lipopolysaccharide export system atp-binding proteinSAMN05428983_2319Not AvailablePositive2305727 - 230653629263.4
rna polymerase, sigma 54 subunit, rpon/siglSAMN05428983_2320Not AvailablePositive2306689 - 230823356711.1
sigma 54 modulation proteinSAMN05428983_2321Not AvailablePositive2308467 - 230903921011.8
pts iia-like nitrogen-regulatory protein ptsnSAMN05428983_2322Not AvailablePositive2309122 - 230958316470.9
molecular chaperone grpeSAMN05428983_2323Not AvailableNegative2309665 - 231030022819.8

Displaying genes 2311 – 2320 of 5241 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.