Agrobacterium fabrum

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium fabrum is a gram-negative, aerobic bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This organism thrives in various habitats and is classified as mesophilic, with an optimal growth temperature of 25 degrees Celsius. A. fabrum is notable for possessing a single replicon and two membranes, which is typical for gram-negative bacteria. The ecological role of A. fabrum is significant as it is a free-living organism, allowing it to interact with a diverse range of environments. This adaptability may contribute to its survival and proliferation in multiple habitats, emphasizing its ecological versatility. The unique traits of A. fabrum, such as its mobility and aerobic nature, suggest it may play a role in nutrient cycling and soil health, although specific interactions within ecosystems are not detailed in the provided data. Overall, Agrobacterium fabrum exemplifies a well-adapted bacterium that occupies diverse ecological niches, highlighting the importance of microbial diversity in maintaining ecosystem functions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium fabrum
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium fabrum
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium fabrum strain PDC82 genome assembly, contig:

Gene Summary

Adenine Count

1136827 bp

Thymine Count

1144814 bp

Guanine Count

1663783 bp

Cytosine Count

1637536 bp

Genome Length

5582960 bp

Protein-coding Genes

5122 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tryptophanyl-trna synthetaseSAMN05428983_2304Not AvailableNegative2287772 - 228883638650.7
catechol 2,3-dioxygenaseSAMN05428983_2305Not AvailableNegative2288940 - 228934415086.7
putative peptidoglycan lipid ii flippaseSAMN05428983_2306Not AvailableNegative2289344 - 229093356910.3
utp--glnb (protein pii) uridylyltransferase, glndSAMN05428983_2307Not AvailableNegative2290941 - 2293769106191.0
dna mismatch repair protein mutsSAMN05428983_2308Not AvailableNegative2293866 - 229658098148.2
ornithine-acyl[acyl carrier protein] n-acyltransferaseSAMN05428983_2309Not AvailableNegative2296708 - 229758932759.2
signal transduction histidine kinaseSAMN05428983_2310Not AvailableNegative2297683 - 229992381410.1
signal peptidase ii aspartic peptidase. merops family a08SAMN05428983_2311Not AvailableNegative2299979 - 230046718197.6
rna methyltransferase, trmh familySAMN05428983_2312Not AvailableNegative2300467 - 230132730884.7
23s rrna (cytosine1962-c5)-methyltransferaseSAMN05428983_2313Not AvailableNegative2301324 - 230245741641.0

Displaying genes 2301 – 2310 of 5241 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.