Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein duf3833 | CLV88_10157 | Not Available | Positive | 55153 - 55740 | 21317.2 |
| short-subunit dehydrogenase | CLV88_10158 | Not Available | Positive | 55737 - 56483 | 26811.4 |
| integrase | CLV88_10159 | Not Available | Positive | 56889 - 58058 | 44347.3 |
| hypothetical protein | CLV88_10160 | Not Available | Positive | 58213 - 58635 | 16106.4 |
| alpa family transcriptional regulator | CLV88_10161 | Not Available | Positive | 58719 - 58928 | 8196.54 |
| p4 family phage/plasmid primase-like protein | CLV88_10162 | Not Available | Positive | 58925 - 61267 | 88203.9 |
| hypothetical protein | CLV88_10163 | Not Available | Positive | 61871 - 62149 | 10441.6 |
| hypothetical protein | CLV88_10164 | Not Available | Positive | 62146 - 62325 | 6650.61 |
| hemolysin type calcium-binding protein | CLV88_10165 | Not Available | Positive | 62562 - 63920 | 46359.6 |
| hypothetical protein | CLV88_10166 | Not Available | Positive | 64393 - 65532 | 41429.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
