Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia sp. SK013 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia sp. SK013
Accession NumberLAJH00000000.1
Gene Summary
Adenine Count
863690 bp
Thymine Count
868777 bp
Guanine Count
1170566 bp
Cytosine Count
1146775 bp
Genome Length
4049808 bp
Protein-coding Genes
3968 genes
Non-Coding Genes
59 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Tail protein | shim_10940 | Not Available | - | 1094812 - 1095462 | 23340.4 |
| Tail protein | shim_10950 | Not Available | - | 1095481 - 1098750 | 118526.0 |
| Phage cell wall peptidase | shim_10960 | Not Available | - | 1098750 - 1099199 | 16460.5 |
| Minor tail protein | shim_10970 | Not Available | - | 1099199 - 1100086 | 32489.4 |
| Tail protein | shim_10980 | Not Available | - | 1100086 - 1100718 | 23502.4 |
| Putative tail tape measure protein | shim_10990 | Not Available | - | 1100730 - 1101383 | 22217.6 |
| hypothetical protein | shim_11000 | Not Available | - | 1101376 - 1101585 | 7455.85 |
| hypothetical protein | shim_11010 | Not Available | - | 1101582 - 1101908 | 11025.1 |
| Gene transfer aget (gta) orfg9-like phage major tail protein | shim_11020 | Not Available | - | 1101910 - 1102323 | 14281.5 |
| hypothetical protein | shim_11030 | Not Available | - | 1102340 - 1102756 | 14857.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.