Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Large packaging protein | CLV88_103217 | Not Available | Positive | 1528868 - 1530250 | 50145.4 |
| Portal protein | CLV88_103218 | Not Available | Positive | 1530563 - 1531573 | 36391.1 |
| hypothetical protein | CLV88_103219 | Not Available | Positive | 1531566 - 1531793 | 8648.5 |
| Putative prohead protease | CLV88_103220 | Not Available | Positive | 1531816 - 1532373 | 20064.7 |
| Phage major capsid protein | CLV88_103221 | Not Available | Positive | 1532405 - 1533586 | 41986.2 |
| Dna packaging/head-tail-connector | CLV88_103222 | Not Available | Positive | 1533714 - 1534328 | 21555.8 |
| head-tail adaptor | CLV88_103223 | Not Available | Positive | 1534328 - 1534663 | 12051.3 |
| Gp33 | CLV88_103224 | Not Available | Positive | 1534660 - 1535076 | 14701.3 |
| Gene transfer aget (gta) orfg9-like phage major tail protein | CLV88_103225 | Not Available | Positive | 1535093 - 1535506 | 14432.7 |
| tail tube gta-gp10-like protein | CLV88_103226 | Not Available | Positive | 1535508 - 1535834 | 11185.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
