Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia haliotis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia haliotis
Accession NumberFOSZ00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
1771 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sulfoxide reductase heme-binding subunit yedz | SAMN04488036_1041 | Not Available | - | 315 - 920 | 22664.9 |
| sulfoxide reductase catalytic subunit yedy | SAMN04488036_1042 | Not Available | - | 1158 - 2060 | 33925.4 |
| glutamate synthase domain-containing protein 2 | SAMN04488036_1043 | Not Available | - | 2288 - 3781 | 54203.4 |
| hypothetical protein | SAMN04488036_1044 | Not Available | - | 3894 - 5594 | 62125.9 |
| hypothetical protein | SAMN04488036_1045 | Not Available | - | 6150 - 6371 | 7741.0 |
| hypothetical protein | SAMN04488036_1046 | Not Available | - | 6563 - 6682 | 4268.2 |
| atp-dependent clp protease atp-binding subunit clpb | SAMN04488036_1047 | Not Available | - | 6884 - 9499 | 95314.8 |
| hypothetical protein | SAMN04488036_1048 | Not Available | + | 9766 - 10026 | 9522.45 |
| phospholipid methyltransferase | SAMN04488036_1049 | Not Available | + | 10081 - 10782 | 26642.6 |
| orotidine-5'-phosphate decarboxylase | SAMN04488036_10410 | Not Available | + | 10854 - 11564 | 24592.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.