Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xaa-pro dipeptidase | CLV88_10149 | Not Available | Positive | 44661 - 45809 | 41371.2 |
| putative metalloprotease | CLV88_10150 | Not Available | Positive | 45846 - 46538 | 25485.2 |
| Ncrna_class:other | Not Available | Not Available | Positive | 47076 - 47428 | Not Available |
| Ncrna_class:other | Not Available | Not Available | Positive | 47260 - 47419 | Not Available |
| ca2+-binding rtx toxin-like protein | CLV88_10151 | Not Available | Negative | 46539 - 50402 | 136694.0 |
| chrr-like anti-ecfsigma factor | CLV88_10152 | Not Available | Negative | 50661 - 51266 | 21482.8 |
| rna polymerase sigma-70 factor (ecf subfamily) | CLV88_10153 | Not Available | Negative | 51299 - 51958 | 24793.0 |
| putative nad/fad-binding protein | CLV88_10154 | Not Available | Positive | 52054 - 53352 | 48292.2 |
| hypothetical protein | CLV88_10155 | Not Available | Positive | 53349 - 54113 | 28259.0 |
| cyclopropane-fatty-acyl-phospholipid synthase | CLV88_10156 | Not Available | Positive | 54113 - 55144 | 37906.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
