Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease-3 | CLV88_10139 | Not Available | Positive | 34734 - 35513 | 29251.5 |
| salicylate hydroxylase | CLV88_10140 | Not Available | Negative | 35621 - 36802 | 42369.1 |
| trar/dksa family transcriptional regulator | CLV88_10141 | Not Available | Negative | 36865 - 37341 | 18529.6 |
| moxr-like atpase | CLV88_10142 | Not Available | Positive | 37424 - 38326 | 34225.0 |
| hypothetical protein | CLV88_10143 | Not Available | Positive | 38351 - 39253 | 31499.2 |
| ribosomal protein s18 acetylase rimi-like enzyme | CLV88_10144 | Not Available | Positive | 39375 - 39830 | 17396.3 |
| protein of unknown function (duf2927) | CLV88_10145 | Not Available | Positive | 39827 - 41191 | 50082.9 |
| hypothetical protein | CLV88_10146 | Not Available | Positive | 41198 - 41365 | 5955.85 |
| hypothetical protein | CLV88_10147 | Not Available | Positive | 41370 - 42554 | 45743.2 |
| choline/carnitine/betaine transport | CLV88_10148 | Not Available | Positive | 42766 - 44469 | 60064.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
