Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| condensin subunit scpb | CLV88_10129 | Not Available | Negative | 24446 - 25102 | 24669.7 |
| condensin subunit scpa | CLV88_10130 | Not Available | Negative | 25095 - 25892 | 30236.4 |
| beta-n-acetylhexosaminidase | CLV88_10131 | Not Available | Negative | 25905 - 26909 | 36250.6 |
| sporulation related protein | CLV88_10132 | Not Available | Negative | 26885 - 27856 | 33628.1 |
| arginyl-trna synthetase | CLV88_10133 | Not Available | Negative | 27937 - 29682 | 63348.6 |
| dgtpase | CLV88_10134 | Not Available | Negative | 29740 - 30879 | 42569.4 |
| iron-sulfur cluster assembly accessory protein | CLV88_10135 | Not Available | Positive | 30978 - 31301 | 11317.3 |
| eama-like transporter family protein | CLV88_10136 | Not Available | Negative | 31302 - 32252 | 34316.3 |
| hypothetical protein | CLV88_10137 | Not Available | Negative | 32252 - 33328 | 40819.6 |
| hypothetical protein | CLV88_10138 | Not Available | Negative | 33395 - 34252 | 28901.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
