Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized metal-binding protein yced (duf177 family) | CLV88_10119 | Not Available | Positive | 17057 - 17614 | 20359.2 |
| lsu ribosomal protein l32p | CLV88_10120 | Not Available | Positive | 17767 - 17973 | 7473.63 |
| phosphate:acyl-[acyl carrier protein] acyltransferase | CLV88_10121 | Not Available | Positive | 17995 - 19092 | 38593.2 |
| 3-oxoacyl-[acyl-carrier-protein] synthase-3 | CLV88_10122 | Not Available | Positive | 19105 - 20079 | 34570.9 |
| integration host factor subunit alpha | CLV88_10123 | Not Available | Positive | 20208 - 20510 | 11000.2 |
| merr-like dna binding protein | CLV88_10124 | Not Available | Positive | 20525 - 21571 | 37704.2 |
| Trna-pro | Not Available | Not Available | Positive | 21630 - 21703 | Not Available |
| dctp deaminase | CLV88_10126 | Not Available | Positive | 21765 - 22847 | 38805.3 |
| hypothetical protein | CLV88_10127 | Not Available | Negative | 22844 - 24058 | 43995.1 |
| hypothetical protein | CLV88_10128 | Not Available | Negative | 24184 - 24387 | 7297.08 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
