Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Putative tail tape measure protein | CLV88_103227 | Not Available | Positive | 1536027 - 1536686 | 22517.2 |
| Tail protein | CLV88_103228 | Not Available | Positive | 1536702 - 1537334 | 23577.5 |
| Minor tail protein | CLV88_103229 | Not Available | Positive | 1537334 - 1538221 | 32097.5 |
| Phage cell wall peptidase | CLV88_103230 | Not Available | Positive | 1538221 - 1538490 | 9928.63 |
| Tail protein | CLV88_103231 | Not Available | Positive | 1538664 - 1540808 | 77113.8 |
| Gene transfer agent-like protein | CLV88_103232 | Not Available | Positive | 1540818 - 1542881 | 75178.5 |
| Serine acetyltransferase | CLV88_103233 | Not Available | Positive | 1543051 - 1543854 | 29039.1 |
| pyruvate dehydrogenase e2 component (dihydrolipoamide acetyltransferase) | CLV88_103234 | Not Available | Negative | 1543907 - 1545211 | 45987.4 |
| Putative transketolase central region-containing protein | CLV88_103235 | Not Available | Negative | 1545226 - 1546605 | 48930.3 |
| enolase-like protein | CLV88_1011 | Not Available | Positive | 1 - 114 | 4113.87 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
