Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eama domain-containing membrane protein rard | SAMN05444000_10462 | Not Available | Negative | 965165 - 966028 | 29551.9 |
| transcriptional regulator, lysr family | SAMN05444000_10463 | Not Available | Negative | 966025 - 967002 | 36208.5 |
| hypothetical protein | SAMN05444000_10464 | Not Available | Positive | 967081 - 967239 | 5913.18 |
| 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-coa reductase | SAMN05444000_10465 | Not Available | Negative | 967415 - 968137 | 25241.1 |
| acetyl-coa acetyltransferase | SAMN05444000_10466 | Not Available | Negative | 968329 - 969507 | 40563.3 |
| eal domain, c-di-gmp-specific phosphodiesterase class i (or its enzymatically inactive variant) | SAMN05444000_10467 | Not Available | Negative | 969656 - 970498 | 30916.1 |
| dna-3-methyladenine glycosylase i | SAMN05444000_10468 | Not Available | Positive | 970610 - 971194 | 22537.8 |
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN05444000_10469 | Not Available | Negative | 971199 - 972128 | 35533.4 |
| hypothetical protein | SAMN05444000_10470 | Not Available | Negative | 972125 - 972514 | 13939.0 |
| selenocysteine lyase/cysteine desulfurase | SAMN05444000_10471 | Not Available | Negative | 972675 - 973763 | 39727.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
