Shimia abyssi str. DSM 100673

star/dumbbell/pleomorphicaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia abyssi strain DSM 100673 is a Gram-negative, aerobic microbe characterized by its unique star or dumbbell shape and pleomorphic morphology. This organism does not form spores and thrives optimally at a temperature of 25.0°C. Shimia abyssi is classified as an organotroph and chemotroph, indicating its reliance on organic compounds for energy and its ability to oxidize them in the presence of oxygen. The distinct morphology of Shimia abyssi, alongside its metabolic capabilities, suggests that it may occupy specific ecological niches where organic substrates are readily available, potentially within marine environments or other organic-rich habitats. The absence of sporulation may indicate a lifestyle that relies on stable environmental conditions, as sporulation typically serves as a survival strategy in fluctuating environments. Further investigation into its ecological role could provide insights into its interactions with other microorganisms and its contributions to biogeochemical cycles in its native habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia abyssi
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shapestar/dumbbell/pleomorphic
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceorganotroph; chemotroph
PathogenicityNot Available

Genome Summary

Shimia abyssi str. DSM 100673

Accession NumberPYGJ00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4533 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Large packaging proteinCLV88_103217Not Available+1528868 - 153025050145.4
Portal proteinCLV88_103218Not Available+1530563 - 153157336391.1
hypothetical proteinCLV88_103219Not Available+1531566 - 15317938648.5
Putative prohead proteaseCLV88_103220Not Available+1531816 - 153237320064.7
Phage major capsid proteinCLV88_103221Not Available+1532405 - 153358641986.2
Dna packaging/head-tail-connectorCLV88_103222Not Available+1533714 - 153432821555.8
head-tail adaptorCLV88_103223Not Available+1534328 - 153466312051.3
Gp33CLV88_103224Not Available+1534660 - 153507614701.3
Gene transfer aget (gta) orfg9-like phage major tail proteinCLV88_103225Not Available+1535093 - 153550614432.7
tail tube gta-gp10-like proteinCLV88_103226Not Available+1535508 - 153583411185.5

Displaying genes 1 – 10 of 4601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites