Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate/methionine/tyrosine aminotransferase | SAMN05444000_103296 | Not Available | Negative | 898594 - 899769 | 43299.7 |
| xanthine phosphoribosyltransferase | SAMN05444000_103297 | Not Available | Negative | 899900 - 900403 | 18942.6 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN05444000_103298 | Not Available | Negative | 900426 - 900965 | 18961.4 |
| enoyl-[acyl-carrier-protein] reductase | SAMN05444000_103299 | Not Available | Negative | 901050 - 901868 | 29093.9 |
| pyridoxamine 5'-phosphate oxidase | SAMN05444000_103300 | Not Available | Positive | 901963 - 902568 | 22695.9 |
| cold-shock dna-binding protein family | SAMN05444000_103301 | Not Available | Positive | 902657 - 903220 | 20544.4 |
| hypothetical protein | SAMN05444000_103302 | Not Available | Positive | 903220 - 903705 | 17658.6 |
| Trna-pro | Not Available | Not Available | Positive | 903727 - 903803 | Not Available |
| ribonucleoside-diphosphate reductase class ii | SAMN05444000_103304 | Not Available | Positive | 904445 - 908110 | 133177.0 |
| dna-binding transcriptional regulator, csgd family | SAMN05444000_1041 | Not Available | Negative | 908783 - 909478 | 25512.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
