Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| holin of 3tms, for gene-transfer release | SAMN05444000_103276 | Not Available | Positive | 876470 - 876985 | 18780.0 |
| cytochrome c-type biogenesis protein ccmf | SAMN05444000_103277 | Not Available | Positive | 877059 - 879032 | 71684.7 |
| cytochrome c-type biogenesis protein ccmh | SAMN05444000_103278 | Not Available | Positive | 879029 - 879484 | 17053.0 |
| enoyl-coa hydratase | SAMN05444000_103279 | Not Available | Positive | 879556 - 880332 | 27579.9 |
| hemolysin-type calcium-binding repeat-containing protein | SAMN05444000_103280 | Not Available | Negative | 880343 - 881143 | 27605.7 |
| citrate synthase | SAMN05444000_103281 | Not Available | Negative | 881339 - 882634 | 48133.4 |
| glutamyl-trna synthetase | SAMN05444000_103282 | Not Available | Negative | 882711 - 884135 | 52250.0 |
| competence protein comec | SAMN05444000_103283 | Not Available | Positive | 884289 - 886328 | 71981.9 |
| sos-response transcriptional repressor, lexa | SAMN05444000_103284 | Not Available | Negative | 886322 - 887050 | 26192.5 |
| molybdopterin molybdotransferase | SAMN05444000_103285 | Not Available | Negative | 887161 - 888336 | 40840.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
