Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| enoyl-coa hydratase | SAMN05444000_103246 | Not Available | Negative | 844698 - 845738 | 37367.3 |
| hypothetical protein | SAMN05444000_103247 | Not Available | Negative | 845758 - 846903 | 41334.1 |
| carboxylate-amine ligase | SAMN05444000_103248 | Not Available | Negative | 847016 - 848149 | 42943.0 |
| dsre/dsrf-like family protein | SAMN05444000_103249 | Not Available | Positive | 848326 - 848772 | 16253.0 |
| hypothetical protein | SAMN05444000_103250 | Not Available | Negative | 848857 - 849273 | 15199.2 |
| malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase | SAMN05444000_103251 | Not Available | Negative | 849355 - 850854 | 53779.4 |
| transcriptional regulator, lysr family | SAMN05444000_103252 | Not Available | Positive | 850960 - 851856 | 33059.8 |
| cbs domain-containing protein | SAMN05444000_103253 | Not Available | Positive | 851916 - 852350 | 15293.8 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05444000_103254 | Not Available | Positive | 852497 - 853537 | 36803.8 |
| phosphopantetheine adenylyltransferase | SAMN05444000_103255 | Not Available | Positive | 853667 - 854158 | 17953.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
