Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidylprolyl isomerase | SAMN05444000_103226 | Not Available | Positive | 822897 - 823442 | 19207.0 |
| protein of unknown function | SAMN05444000_103227 | Not Available | Positive | 823537 - 824511 | 36159.1 |
| hypothetical protein | SAMN05444000_103228 | Not Available | Positive | 824493 - 824888 | 14063.0 |
| choline-sulfatase | SAMN05444000_103229 | Not Available | Positive | 825083 - 826549 | 55803.2 |
| protein ccma, bactofilin family | SAMN05444000_103230 | Not Available | Negative | 826621 - 827124 | 17298.8 |
| murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domain | SAMN05444000_103231 | Not Available | Negative | 827114 - 828427 | 48911.5 |
| uncharacterized conserved protein, contains ferritin-like duf455 domain | SAMN05444000_103232 | Not Available | Negative | 828596 - 829429 | 31077.1 |
| peroxiredoxin q/bcp | SAMN05444000_103233 | Not Available | Negative | 829426 - 829887 | 17015.6 |
| protein of unknown function | SAMN05444000_103234 | Not Available | Positive | 829951 - 833337 | 120718.0 |
| s-adenosylmethionine:trna ribosyltransferase-isomerase | SAMN05444000_103235 | Not Available | Positive | 833334 - 834380 | 37812.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
