Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate dehydrogenase e1 component alpha subunit | SAMN05444000_103216 | Not Available | Negative | 814261 - 815250 | 36121.0 |
| cell division protein ftsb | SAMN05444000_103217 | Not Available | Negative | 815393 - 815695 | 11284.7 |
| putative acyl-coa dehydrogenase | SAMN05444000_103218 | Not Available | Positive | 815874 - 817502 | 58800.8 |
| putative rna methylase family upf0020 | SAMN05444000_103219 | Not Available | Positive | 817566 - 818516 | 34580.8 |
| hypothetical protein | SAMN05444000_103220 | Not Available | Negative | 818532 - 818708 | 6754.02 |
| protein of unknown function | SAMN05444000_103221 | Not Available | Negative | 818705 - 818956 | 9860.26 |
| transcriptional regulator, lysr family | SAMN05444000_103222 | Not Available | Positive | 819090 - 820028 | 33968.3 |
| fructose-bisphosphate aldolase, class i | SAMN05444000_103223 | Not Available | Negative | 820034 - 820927 | 31647.0 |
| phosphoglycerate kinase | SAMN05444000_103224 | Not Available | Negative | 821074 - 822264 | 41434.9 |
| peptidylprolyl isomerase | SAMN05444000_103225 | Not Available | Positive | 822392 - 822904 | 18599.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
