Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoacyl-[acyl-carrier-protein] reductase | SAMN05444000_103189 | Not Available | Positive | 790017 - 790754 | 25307.7 |
| acyl carrier protein | SAMN05444000_103190 | Not Available | Positive | 791010 - 791243 | 8405.73 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | SAMN05444000_103191 | Not Available | Positive | 791431 - 792174 | 26739.7 |
| hypothetical protein | SAMN05444000_103192 | Not Available | Positive | 792382 - 792876 | 18747.7 |
| 3-oxoacyl-[acyl-carrier-protein] synthase ii | SAMN05444000_103193 | Not Available | Positive | 792995 - 794254 | 43774.9 |
| upf0755 protein | SAMN05444000_103194 | Not Available | Positive | 794254 - 795405 | 41543.4 |
| hypothetical protein | SAMN05444000_103195 | Not Available | Positive | 795677 - 796018 | 12712.0 |
| pyruvate dehydrogenase e2 component (dihydrolipoamide acetyltransferase) | SAMN05444000_103213 | Not Available | Negative | 811198 - 812499 | 45071.1 |
| hypothetical protein | SAMN05444000_103214 | Not Available | Negative | 812501 - 812872 | 12883.6 |
| pyruvate dehydrogenase e1 component beta subunit | SAMN05444000_103215 | Not Available | Negative | 812874 - 814238 | 48302.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
