Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chloramphenicol-sensitive protein rard | SAMN05444000_103129 | Not Available | Positive | 730078 - 730989 | 32529.7 |
| hypothetical protein | SAMN05444000_103130 | Not Available | Negative | 730932 - 731483 | 19927.1 |
| lysm domain-containing protein | SAMN05444000_103131 | Not Available | Positive | 731583 - 732923 | 46684.2 |
| protein of unknown function | SAMN05444000_103132 | Not Available | Positive | 733330 - 735255 | 71511.0 |
| atp-binding cassette, subfamily b | SAMN05444000_103133 | Not Available | Positive | 735548 - 737371 | 67007.9 |
| multidrug efflux pump | SAMN05444000_103134 | Not Available | Negative | 737605 - 741348 | 135979.0 |
| membrane fusion protein, multidrug efflux system | SAMN05444000_103135 | Not Available | Negative | 741345 - 742583 | 43534.7 |
| hypothetical protein | SAMN05444000_103136 | Not Available | Positive | 742803 - 743489 | 24282.7 |
| outer membrane protein assembly factor bamb, contains pqq-like beta-propeller repeat | SAMN05444000_103137 | Not Available | Positive | 743515 - 744825 | 46058.7 |
| gtp-binding protein | SAMN05444000_103138 | Not Available | Positive | 744874 - 746334 | 53998.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
