Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding cassette, subfamily f, uup | SAMN05444000_103109 | Not Available | Positive | 710584 - 712368 | 65641.2 |
| hypothetical protein | SAMN05444000_103110 | Not Available | Negative | 712365 - 712967 | 22261.8 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05444000_103111 | Not Available | Negative | 712967 - 713722 | 25808.9 |
| tyrosyl-trna synthetase | SAMN05444000_103112 | Not Available | Negative | 713950 - 715197 | 45802.8 |
| anhydro-n-acetylmuramic acid kinase | SAMN05444000_103113 | Not Available | Positive | 715261 - 716367 | 38586.1 |
| amidohydrolase family protein | SAMN05444000_103114 | Not Available | Negative | 716493 - 716693 | 7036.59 |
| pp_00703 | SAMN05444000_103115 | Not Available | Positive | 717286 - 718284 | Not Available |
| uncharacterized membrane protein yfca | SAMN05444000_103116 | Not Available | Positive | 718311 - 719135 | 28432.2 |
| hypothetical protein | SAMN05444000_103117 | Not Available | Positive | 719129 - 719902 | 28810.1 |
| hypothetical protein | SAMN05444000_103118 | Not Available | Negative | 719899 - 720144 | 9430.35 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
