Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phasin protein | SAMN05444000_10339 | Not Available | Positive | 652979 - 653425 | 15538.5 |
| polyhydroxyalkanoate synthesis repressor phar | SAMN05444000_10340 | Not Available | Positive | 653571 - 654122 | 20151.9 |
| dtdp-4-amino-4,6-dideoxygalactose transaminase | SAMN05444000_10341 | Not Available | Negative | 654184 - 655401 | 44406.0 |
| gamma-glutamylputrescine oxidase | SAMN05444000_10342 | Not Available | Negative | 655558 - 656862 | 47246.6 |
| l-glutamine synthetase | SAMN05444000_10343 | Not Available | Negative | 656951 - 658309 | 50343.9 |
| gmp synthase (glutamine-hydrolysing) | SAMN05444000_10344 | Not Available | Negative | 658309 - 658989 | 24653.0 |
| glutamate--putrescine ligase | SAMN05444000_10345 | Not Available | Negative | 659124 - 660440 | 47707.0 |
| hypothetical protein | SAMN05444000_10346 | Not Available | Positive | 660602 - 661021 | 14823.7 |
| amino acid abc transporter membrane protein 2, paat family | SAMN05444000_10347 | Not Available | Negative | 661048 - 661854 | 30584.6 |
| amino acid abc transporter membrane protein 1, paat family | SAMN05444000_10348 | Not Available | Negative | 661851 - 662735 | 33137.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
