Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-glucose dehydrogenase | SAMN05444000_102268 | Not Available | Positive | 601506 - 602681 | 42539.8 |
| hypothetical protein | SAMN05444000_102269 | Not Available | Negative | 602852 - 602962 | 4160.87 |
| protein of unknown function | SAMN05444000_102270 | Not Available | Negative | 602959 - 603405 | 16376.4 |
| porin | SAMN05444000_102271 | Not Available | Negative | 603689 - 604876 | 42565.9 |
| zinc transport system substrate-binding protein | SAMN05444000_102272 | Not Available | Negative | 604905 - 605795 | 32898.8 |
| putative abc transport system permease protein | SAMN05444000_102273 | Not Available | Negative | 605798 - 606982 | 42528.7 |
| putative abc transport system atp-binding protein/putative abc transport system atp-binding protein | SAMN05444000_102274 | Not Available | Negative | 606979 - 607644 | 24392.2 |
| hypothetical protein | SAMN05444000_102275 | Not Available | Negative | 607641 - 609479 | 67955.4 |
| hypothetical protein | SAMN05444000_102276 | Not Available | Negative | 609485 - 610066 | 20399.1 |
| rnase z | SAMN05444000_102277 | Not Available | Negative | 610149 - 611360 | 44262.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
