Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amp-binding enzyme c-terminal domain-containing protein | SAMN05444000_102258 | Not Available | Positive | 589025 - 589903 | 31844.4 |
| transposase and inactivated derivatives, is30 family | SAMN05444000_102259 | Not Available | Negative | 590152 - 591003 | 32352.5 |
| helix-turn-helix domain-containing protein | SAMN05444000_102260 | Not Available | Negative | 591067 - 591414 | 13344.3 |
| phosphoglycerol transferase mdob | SAMN05444000_102261 | Not Available | Positive | 591776 - 594169 | 87629.5 |
| udp-glucuronate decarboxylase | SAMN05444000_102262 | Not Available | Positive | 594313 - 595371 | 38732.8 |
| udp-l-arabinose 4-epimerase | SAMN05444000_102263 | Not Available | Positive | 595368 - 596363 | 35811.8 |
| cellulose synthase (udp-forming) | SAMN05444000_102264 | Not Available | Positive | 596366 - 598213 | 69273.7 |
| endoglucanase | SAMN05444000_102265 | Not Available | Positive | 598210 - 599112 | 33943.9 |
| hypothetical protein | SAMN05444000_102266 | Not Available | Positive | 599387 - 599665 | 9554.32 |
| tpr repeat | SAMN05444000_102267 | Not Available | Positive | 600005 - 601420 | 50475.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
