Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphatidylcholine synthase | SAMN05444000_102177 | Not Available | Negative | 509133 - 509825 | 25923.2 |
| hypothetical protein | SAMN05444000_102178 | Not Available | Negative | 509992 - 511299 | 48596.1 |
| prepilin peptidase cpaa | SAMN05444000_102179 | Not Available | Negative | 511404 - 511904 | 17976.4 |
| tetratricopeptide repeat-containing protein | SAMN05444000_102180 | Not Available | Negative | 511920 - 512768 | 31545.2 |
| tetratricopeptide repeat-containing protein | SAMN05444000_102181 | Not Available | Negative | 512799 - 513359 | 20159.7 |
| type ii secretion system protein f (gspf) | SAMN05444000_102182 | Not Available | Negative | 513372 - 514328 | 35145.6 |
| tight adherence protein b | SAMN05444000_102183 | Not Available | Negative | 514348 - 515316 | 35659.3 |
| pilus assembly protein cpaf | SAMN05444000_102184 | Not Available | Negative | 515322 - 516779 | 53275.6 |
| pilus assembly protein cpae | SAMN05444000_102185 | Not Available | Negative | 516796 - 518064 | 46390.2 |
| outer membrane protein ompa | SAMN05444000_102186 | Not Available | Negative | 518294 - 518944 | 24051.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
