Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| manganese-dependent inorganic pyrophosphatase | SAMN05444000_102137 | Not Available | Negative | 470365 - 471285 | 33089.6 |
| hypothetical protein | SAMN05444000_102138 | Not Available | Negative | 471437 - 472438 | 36410.0 |
| hypothetical protein | SAMN05444000_102139 | Not Available | Positive | 472564 - 473208 | 23576.3 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05444000_102140 | Not Available | Negative | 473226 - 474110 | 31656.0 |
| chaperonin groes | SAMN05444000_102141 | Not Available | Positive | 474353 - 474640 | 10176.4 |
| chaperonin groel | SAMN05444000_102142 | Not Available | Positive | 474719 - 476368 | 57486.1 |
| phage tail collar domain | SAMN05444000_102143 | Not Available | Positive | 476511 - 476921 | 14315.3 |
| eama domain-containing membrane protein rard | SAMN05444000_102144 | Not Available | Positive | 476981 - 477811 | 28788.0 |
| putative acetyltransferase | SAMN05444000_102145 | Not Available | Positive | 477848 - 478315 | 16973.6 |
| alpha/beta hydrolase family protein | SAMN05444000_102146 | Not Available | Positive | 478456 - 479175 | 25862.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
