Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted pyrophosphatase or phosphodiesterase, alkp superfamily | SAMN05444000_102127 | Not Available | Negative | 461541 - 463211 | 60841.2 |
| ribose-phosphate pyrophosphokinase | SAMN05444000_102128 | Not Available | Negative | 463346 - 464365 | 37208.3 |
| 2-hydroxychromene-2-carboxylate isomerase | SAMN05444000_102129 | Not Available | Positive | 464483 - 465082 | 21717.6 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05444000_102130 | Not Available | Positive | 465084 - 465872 | 28242.9 |
| l-threonine aldolase | SAMN05444000_102131 | Not Available | Negative | 465953 - 466999 | 37838.9 |
| hypothetical protein | SAMN05444000_102132 | Not Available | Negative | 466999 - 467475 | 18200.3 |
| riboflavin kinase / fmn adenylyltransferase | SAMN05444000_102133 | Not Available | Negative | 467472 - 468404 | 33613.9 |
| hypothetical protein | SAMN05444000_102134 | Not Available | Negative | 468520 - 468795 | 10107.4 |
| 3-hydroxybutyryl-coa dehydratase | SAMN05444000_102135 | Not Available | Negative | 468830 - 469273 | 16231.7 |
| had-superfamily class iia hydrolase, tigr01459 | SAMN05444000_102136 | Not Available | Negative | 469377 - 470252 | 31416.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
