Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase family m23 | SAMN05444000_102117 | Not Available | Negative | 450774 - 451742 | 34254.1 |
| atp-dependent clp protease atp-binding subunit clpa | SAMN05444000_102118 | Not Available | Negative | 451739 - 454060 | 84733.7 |
| hydroxyacylglutathione hydrolase | SAMN05444000_102119 | Not Available | Negative | 454228 - 455043 | 29324.7 |
| methyltransferase domain-containing protein | SAMN05444000_102120 | Not Available | Positive | 455057 - 455797 | 27274.3 |
| atp synthase f1 subcomplex delta subunit | SAMN05444000_102121 | Not Available | Positive | 456043 - 456738 | 24499.7 |
| atp synthase f1 subcomplex alpha subunit | SAMN05444000_102122 | Not Available | Positive | 456738 - 458276 | 54816.4 |
| f-type h+-transporting atpase subunit gamma | SAMN05444000_102123 | Not Available | Positive | 458289 - 459164 | 31557.7 |
| atp synthase f1 subcomplex beta subunit | SAMN05444000_102124 | Not Available | Positive | 459181 - 460605 | 50221.1 |
| atp synthase f1 subcomplex epsilon subunit | SAMN05444000_102125 | Not Available | Positive | 460617 - 461015 | 13340.7 |
| h-type lectin domain-containing protein | SAMN05444000_102126 | Not Available | Positive | 461174 - 461524 | 13426.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
