Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| snoal-like polyketide cyclase | SAMN05444000_10297 | Not Available | Negative | 427848 - 428501 | 23778.4 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05444000_10298 | Not Available | Negative | 428485 - 429072 | 20117.2 |
| transcriptional regulator, lysr family | SAMN05444000_10299 | Not Available | Positive | 429183 - 430061 | 31927.5 |
| hypothetical protein | SAMN05444000_102100 | Not Available | Negative | 430402 - 430629 | 8274.08 |
| peptidase family m20/m25/m40 | SAMN05444000_102101 | Not Available | Negative | 431137 - 431415 | 9931.81 |
| hypothetical protein | SAMN05444000_102102 | Not Available | Positive | 431922 - 432875 | 34617.0 |
| hint domain-containing protein | SAMN05444000_102103 | Not Available | Positive | 432972 - 434033 | 38494.9 |
| transcriptional regulator, lysr family | SAMN05444000_102104 | Not Available | Positive | 434429 - 435349 | 33866.5 |
| trimethylamine---corrinoid protein co-methyltransferase | SAMN05444000_102105 | Not Available | Positive | 435443 - 436996 | 55576.1 |
| dimethylglycine dehydrogenase | SAMN05444000_102106 | Not Available | Positive | 437021 - 439432 | 87625.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
