Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c peroxidase | SAMN05444000_10287 | Not Available | Negative | 416464 - 417786 | 47561.3 |
| aldose 1-epimerase | SAMN05444000_10288 | Not Available | Negative | 417774 - 418760 | 36168.4 |
| d-xylose isomerase | SAMN05444000_10289 | Not Available | Negative | 418760 - 420064 | 48677.9 |
| xylulokinase | SAMN05444000_10290 | Not Available | Negative | 420061 - 421515 | 51620.2 |
| transcriptional regulator, laci family | SAMN05444000_10291 | Not Available | Negative | 421693 - 422697 | 35679.1 |
| glyceraldehyde-3-phosphate dehydrogenase (nad+) | SAMN05444000_10292 | Not Available | Positive | 422879 - 423910 | 36688.8 |
| pp_00394 | SAMN05444000_10293 | Not Available | Positive | 424047 - 424532 | Not Available |
| universal stress protein family protein | SAMN05444000_10294 | Not Available | Negative | 424529 - 425362 | 29957.4 |
| hypothetical protein | SAMN05444000_10295 | Not Available | Positive | 425419 - 425586 | 6347.67 |
| propionate coa-transferase | SAMN05444000_10296 | Not Available | Positive | 425617 - 427536 | 68657.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
