Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| agmatinase | SAMN05444000_10277 | Not Available | Positive | 405814 - 406761 | 34388.1 |
| sensor histidine kinase inhibitor, kipi family | SAMN05444000_10278 | Not Available | Positive | 406875 - 407627 | 27206.6 |
| allophanate hydrolase | SAMN05444000_10279 | Not Available | Positive | 407624 - 408526 | 31667.8 |
| upf0271 protein | SAMN05444000_10280 | Not Available | Positive | 408646 - 409419 | 27285.8 |
| glucokinase | SAMN05444000_10281 | Not Available | Negative | 409423 - 410367 | 33614.8 |
| monosaccharide abc transporter atp-binding protein, cut2 family | SAMN05444000_10282 | Not Available | Negative | 410372 - 411124 | 26978.5 |
| d-xylose transport system permease protein | SAMN05444000_10283 | Not Available | Negative | 411124 - 412422 | 45308.5 |
| xylose-binding protein | SAMN05444000_10284 | Not Available | Negative | 412507 - 413535 | 35115.2 |
| sugar kinase of the nbd/hsp70 family, may contain an n-terminal hth domain | SAMN05444000_10285 | Not Available | Positive | 413740 - 414933 | 42470.9 |
| repeat domain-containing protein | SAMN05444000_10286 | Not Available | Positive | 414923 - 416470 | 56223.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
