Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin, 2fe-2s | SAMN05444000_10267 | Not Available | Negative | 397303 - 397617 | 10879.7 |
| glutamine synthetase | SAMN05444000_10268 | Not Available | Negative | 397705 - 398994 | 47160.1 |
| hypothetical protein | SAMN05444000_10269 | Not Available | Negative | 399006 - 400268 | 48004.0 |
| gmp synthase-glutamine amidotransferase | SAMN05444000_10270 | Not Available | Positive | 400365 - 401075 | 25917.4 |
| uncharacterized conserved protein phnb, glyoxalase superfamily | SAMN05444000_10271 | Not Available | Negative | 401072 - 401461 | 14496.1 |
| transcriptional regulator, gntr family | SAMN05444000_10272 | Not Available | Negative | 401479 - 402312 | 30543.8 |
| sulfopyruvate decarboxylase subunit alpha | SAMN05444000_10273 | Not Available | Positive | 402549 - 403055 | 18751.8 |
| sulfopyruvate decarboxylase subunit beta | SAMN05444000_10274 | Not Available | Positive | 403052 - 403606 | 19648.9 |
| 3-hydroxyisobutyrate dehydrogenase | SAMN05444000_10275 | Not Available | Negative | 403743 - 404690 | 33787.6 |
| lysr family transcriptional regulator, glycine cleavage system transcriptional activator | SAMN05444000_10276 | Not Available | Positive | 404819 - 405694 | 31557.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
