Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asma family protein | SAMN05444000_10257 | Not Available | Positive | 384148 - 386850 | 95357.5 |
| uncharacterized protein, upf0261 family | SAMN05444000_10258 | Not Available | Negative | 386919 - 388151 | 43633.1 |
| ser/thr protein kinase rdoa involved in cpx stress response, mazf antagonist | SAMN05444000_10259 | Not Available | Negative | 388148 - 389080 | 34849.4 |
| 4-aminobutyrate aminotransferase | SAMN05444000_10260 | Not Available | Negative | 389080 - 390372 | 46380.0 |
| gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase | SAMN05444000_10261 | Not Available | Negative | 390372 - 391634 | 44346.4 |
| putative tricarboxylic transport membrane protein | SAMN05444000_10262 | Not Available | Negative | 391721 - 393340 | 58465.3 |
| tripartite tricarboxylate transporter tctb family protein | SAMN05444000_10263 | Not Available | Negative | 393351 - 393920 | 22132.2 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05444000_10264 | Not Available | Negative | 393948 - 394889 | 32392.6 |
| transcriptional regulator, iclr family | SAMN05444000_10265 | Not Available | Positive | 395048 - 395851 | 29497.6 |
| hypothetical protein | SAMN05444000_10266 | Not Available | Positive | 395870 - 397228 | 48346.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
