Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator, glycine cleavage system transcriptional activator | SAMN05444000_10236 | Not Available | Positive | 360294 - 361238 | 35174.1 |
| hypothetical protein | SAMN05444000_10237 | Not Available | Negative | 361235 - 361876 | 22683.5 |
| 2,4-dienoyl-coa reductase | SAMN05444000_10238 | Not Available | Negative | 361996 - 363300 | 47525.2 |
| hypothetical protein | SAMN05444000_10239 | Not Available | Negative | 363824 - 365428 | 60765.5 |
| hypothetical protein | SAMN05444000_10240 | Not Available | Negative | 365874 - 366806 | 36119.3 |
| glycosyl transferase family 2 | SAMN05444000_10241 | Not Available | Negative | 366799 - 368778 | 75925.9 |
| transposase inso and inactivated derivatives | SAMN05444000_10242 | Not Available | Negative | 368932 - 369837 | 34216.7 |
| transposase | SAMN05444000_10244 | Not Available | Negative | 369834 - 370166 | 12578.2 |
| tungstate transport system permease protein | SAMN05444000_10245 | Not Available | Positive | 370580 - 371284 | 25324.8 |
| phosphate abc transporter atp-binding protein, phot family | SAMN05444000_10246 | Not Available | Positive | 371281 - 371994 | 25720.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
