Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) | SAMN05444000_10226 | Not Available | Positive | 349043 - 349897 | 31619.3 |
| 2-oxohept-3-enedioate hydratase | SAMN05444000_10227 | Not Available | Positive | 349894 - 350694 | 28871.3 |
| hypothetical protein | SAMN05444000_10228 | Not Available | Positive | 350855 - 351688 | 31757.8 |
| hypothetical protein | SAMN05444000_10229 | Not Available | Positive | 351704 - 352537 | 31673.1 |
| hypothetical protein | SAMN05444000_10230 | Not Available | Positive | 352541 - 353377 | 31322.5 |
| transcriptional regulator, arac family | SAMN05444000_10231 | Not Available | Negative | 353415 - 354371 | 34465.4 |
| acetylornithine deacetylase | SAMN05444000_10232 | Not Available | Negative | 354615 - 355769 | 41180.0 |
| ectoine hydrolase | SAMN05444000_10233 | Not Available | Negative | 355773 - 356957 | 43916.2 |
| l-2,4-diaminobutyrate transaminase | SAMN05444000_10234 | Not Available | Positive | 357120 - 358493 | 49407.7 |
| trimethylamine---corrinoid protein co-methyltransferase | SAMN05444000_10235 | Not Available | Positive | 358630 - 360156 | 55734.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
