Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein, duf849 family | SAMN05444000_10216 | Not Available | Positive | 336921 - 337811 | 32041.5 |
| putative spermidine/putrescine transport system atp-binding protein | SAMN05444000_10217 | Not Available | Positive | 337813 - 338817 | 36915.1 |
| putative spermidine/putrescine transport system substrate-binding protein | SAMN05444000_10218 | Not Available | Positive | 338904 - 340013 | 39843.9 |
| putative spermidine/putrescine transport system permease protein | SAMN05444000_10219 | Not Available | Positive | 340084 - 340929 | 31113.5 |
| putative spermidine/putrescine transport system permease protein | SAMN05444000_10220 | Not Available | Positive | 340929 - 341726 | 29153.4 |
| acyl-coa dehydrogenase | SAMN05444000_10221 | Not Available | Positive | 341739 - 342899 | 42636.1 |
| acyl-coa synthetase (ndp forming) | SAMN05444000_10222 | Not Available | Positive | 342896 - 344992 | 73823.8 |
| cubico group peptidase, beta-lactamase class c family | SAMN05444000_10223 | Not Available | Positive | 344992 - 346137 | 42217.2 |
| 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase | SAMN05444000_10224 | Not Available | Positive | 346505 - 348013 | 54630.1 |
| 3,4-dihydroxyphenylacetate 2,3-dioxygenase | SAMN05444000_10225 | Not Available | Positive | 348036 - 348890 | 31548.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
