Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trimethylamine---corrinoid protein co-methyltransferase | SAMN05444000_1026 | Not Available | Negative | 325265 - 326818 | 54840.9 |
| amino acid synthesis | SAMN05444000_1027 | Not Available | Negative | 327251 - 327859 | 21886.1 |
| crotonobetainyl-coa:carnitine coa-transferase caib | SAMN05444000_1028 | Not Available | Negative | 327877 - 329988 | 75940.8 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05444000_1029 | Not Available | Negative | 329985 - 330794 | 29159.8 |
| reactive intermediate/imine deaminase | SAMN05444000_10210 | Not Available | Negative | 330796 - 331197 | 14402.3 |
| aldehyde dehydrogenase (nad+) | SAMN05444000_10211 | Not Available | Positive | 331340 - 332821 | 53624.7 |
| flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ssud and methylene tetrahydromethanopterin reductase) | SAMN05444000_10212 | Not Available | Positive | 332848 - 333882 | 38933.6 |
| crotonobetainyl-coa hydratase | SAMN05444000_10213 | Not Available | Positive | 333929 - 334732 | 29366.3 |
| carnitine 3-dehydrogenase | SAMN05444000_10214 | Not Available | Positive | 334734 - 335684 | 34380.3 |
| transcriptional regulator, arac family with amidase-like domain | SAMN05444000_10215 | Not Available | Negative | 335726 - 336790 | 39801.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
