Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiosulfate/3-mercaptopyruvate sulfurtransferase | SAMN05444000_101304 | Not Available | Negative | 318199 - 319056 | 31396.2 |
| hypothetical protein | SAMN05444000_101305 | Not Available | Negative | 319158 - 319433 | 8286.44 |
| ssra-binding protein | SAMN05444000_101306 | Not Available | Negative | 319564 - 320040 | 18267.9 |
| hypothetical protein | SAMN05444000_101308 | Not Available | Positive | 320435 - 320761 | 11594.9 |
| cold-shock dna-binding protein family | SAMN05444000_101309 | Not Available | Negative | 320879 - 321085 | 7172.35 |
| hypothetical protein | SAMN05444000_1021 | Not Available | Negative | 321518 - 321667 | 6066.3 |
| integrase | SAMN05444000_1022 | Not Available | Negative | 321667 - 322815 | 43888.9 |
| hypothetical protein | SAMN05444000_1023 | Not Available | Negative | 322934 - 323167 | 8655.68 |
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) | SAMN05444000_1024 | Not Available | Negative | 323489 - 324337 | 30306.6 |
| ketopantoate reductase | SAMN05444000_1025 | Not Available | Negative | 324339 - 325268 | 32346.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
