Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia gijangensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920331 bp
Thymine Count
925384 bp
Guanine Count
1137401 bp
Cytosine Count
1111454 bp
Genome Length
4094570 bp
Protein-coding Genes
3992 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 family | SAMN05444000_101294 | Not Available | Negative | 306513 - 306974 | 15588.7 |
| hlyd family secretion protein | SAMN05444000_101295 | Not Available | Negative | 307134 - 308441 | 48290.9 |
| atp-binding cassette, subfamily c | SAMN05444000_101296 | Not Available | Negative | 308438 - 310171 | 61833.4 |
| phospholipid-binding lipoprotein mlaa | SAMN05444000_101297 | Not Available | Positive | 310362 - 311114 | 27671.3 |
| phospholipid transport system substrate-binding protein | SAMN05444000_101298 | Not Available | Positive | 311116 - 311709 | 21770.6 |
| membrane carboxypeptidase (penicillin-binding protein) | SAMN05444000_101299 | Not Available | Negative | 311736 - 313916 | 78042.2 |
| nitrogen regulatory protein p-ii family | SAMN05444000_101300 | Not Available | Positive | 314174 - 314512 | 12202.9 |
| ammonium transporter | SAMN05444000_101301 | Not Available | Positive | 314537 - 315874 | 46494.4 |
| hypothetical protein | SAMN05444000_101302 | Not Available | Positive | 315984 - 316943 | 35362.6 |
| aromatic amino acid aminotransferase apoenzyme | SAMN05444000_101303 | Not Available | Negative | 317015 - 318199 | 42694.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
